Xibing Xu | Data Science | Best Researcher Award

Dr. Xibing Xu | Data Science | Best Researcher Award

Shenzhen Medical Academy of Research and Translation, China

Author Profiles

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Early Academic Pursuits 🎓

Dr. Xibing Xu’s academic journey began with a solid foundation in biological sciences, leading to his Master’s degree from Shandong University in 2012. His Master’s thesis focused on the two-component signal transduction systems of Streptomyces hygroscopicus. This foundational research sparked his interest in bacterial biology and set the stage for his doctoral studies at Sichuan University. Dr. Xu’s Ph.D. thesis, completed in 2015, centered on “Protein homeostasis regulation and ubiquitin-like systems in bacteria,” deepening his expertise in bacterial systems and protein regulation.

Professional Endeavors 💼

his Ph.D., Dr. Xu expanded his research horizons by embarking on various international and prestigious roles. In 2017-2018, he was awarded a visiting scholarship by the China Scholarship Council, enabling him to work as a visiting scholar at the Laboratoire de Microbiologie et Génétique Moléculaire (LMGM) in Toulouse, France. This experience enhanced his research capabilities and fostered a deeper understanding of bacterial molecular mechanisms. From 2020 to the present, Dr. Xu has served as a Postdoctoral Fellow at LMGM, where he leads the ANR project M-Tox, which investigates translational control by HigB1 and MenT toxins in Mycobacterium tuberculosis.

Contributions and Research Focus 🔬

Dr. Xu’s research is at the cutting edge of microbiology, focusing on bacterial growth inhibition mechanisms mediated by toxins in toxin-antitoxin systems. Specifically, his work on deleterious tRNA nucleotidyltransferase toxins, like MenT in Mycobacterium tuberculosis, has unveiled novel bacterial mechanisms that regulate translation and protein homeostasis. His research involves exploring the role of tRNA biology in bacterial growth control and the interaction between tRNA and toxin proteins, a focus that has the potential to inform future therapeutic strategies for bacterial infections. His expertise extends to RNA-seq, enzymology, and protein-RNA/DNA interactions, all of which contribute to a deeper understanding of bacterial survival and virulence.

Impact and Influence 🌍

Dr. Xu’s work has far-reaching implications in microbial Microbiologie and therapeutic development. By identifying key mechanisms that control bacterial growth through toxin-antitoxin systems, his research addresses critical challenges in combating drug-resistant bacterial infections. His investigations into tRNA biology have provided insights into how bacteria regulate protein synthesis, which could lead to the development of novel antimicrobial strategies. His innovative research has garnered attention within the scientific community, reflected in invitations to present at major international conferences such as the 29th International tRNA Conference in 2024.

Academic Citations 📚

Dr. Xu’s contributions to the field have not only enhanced scientific knowledge but have also been widely recognized and cited in academic publications. His work on toxin-antitoxin systems and tRNA nucleotidyltransferase toxins has attracted significant attention in the microbiology and biochemistry fields. As his research continues to influence studies on bacterial translation control, his citation index is expected to grow, cementing his reputation as an expert in bacterial growth regulation and antibiotic resistance mechanisms.

Technical Skills 🛠️

Dr. Xu possesses a broad array of technical skills in biochemistry and molecular biology, enabling him to conduct complex experimental research. He is proficient in RNA-seq library design and construction, protein-DNA/RNA interaction analysis, and toxin protein purification and activity assays. Additionally, he has extensive experience in cell-free transcription and translation assays, essential for studying the mechanistic details of translation regulation in bacteria. His technical prowess underpins the success of his innovative research in bacterial biology and protein homeostasis.

Teaching Experience 👨‍🏫

Dr. Xu has a strong track record in teaching and academic supervision. From 2015 to 2020, he taught various courses such as Medical Biology, Medical Genetics, and Medical Cell Biology at Henan University of Science and Technology. His teaching not only involved extensive classroom hours but also practical experimental courses, allowing students to gain hands-on experience in molecular biology techniques. Since 2024, Dr. Xu has been supervising Master’s students at the University Paul Sabatier in Toulouse, mentoring students on projects related to phage peptides and protein homeostasis in bacteria, ensuring the next generation of scientists is equipped with the necessary research skills.

Legacy and Future Contributions 🌟

Dr. Xu’s current and future research promises to continue his legacy of groundbreaking work in microbiology, particularly in the areas of bacterial toxin-antitoxin systems and translation control. As a postdoctoral fellow and researcher at LMGM, he is leading projects that could revolutionize our understanding of bacterial growth regulation, with direct applications in combating drug-resistant Mycobacterium tuberculosis. His ongoing research, mentorship, and commitment to expanding scientific knowledge will ensure that his contributions to the field of microbiology will continue to grow in impact and influence.

 Top Noted Publications 📖

Title: Inducible auto-phosphorylation regulates a widespread family of nucleotidyltransferase toxins

Authors: Tom J. Arrowsmith, Xibing Xu, Shangze, Ben Usher, Peter Stokes, Megan Guest, Agnieszka K. Bronowska, Pierre Genevaux, Tim R. Blower
Journal: Nature Communications
Year: 2024

Title: MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding

Authors: Xibing Xu, Ben Usher, C. Gutierrez, R. Barriot, T.J. Arrowsmith, X. Han, P. Redder, O. Neyrolles, T.R. Blower, P. Genevaux
Journal: Nature Communications
Year: 2023

Title: Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis

Authors: Moïse, Emmanuel Giudice, Xibing Xu, Hatice Akarsu, Patricia Bordes, Valérie Guillet, Donna-Joe Bigot, Nawel Slama, Gaetano D’Urso, Sophie Chat et al.
Journal: Nature Communications
Year: 2022

Title: ClpXP-mediated Degradation of the TAC Antitoxin is Neutralized by the SecB-like Chaperone in Mycobacterium tuberculosis

Authors: Pauline Texier, Patricia Bordes, Jyotsna Nagpal, Ambre Julie Sala, Moise Mansour, Anne-Marie Cirinesi, Xibing Xu, David Andrew Dougan, Pierre Genevaux
Journal: Journal of Molecular Biology
Year: 2021

Title: The ubiquitin-like modification by ThiS and ThiF in Escherichia coli

Authors: Xibing Xu, Tao Wang, Yulong Niu, Ke Liang, Yi Yang
Journal: International Journal of Biological Macromolecules
Year: 2019

Title: BAH1 an E3 Ligase from Arabidopsis thaliana Stabilizes Heat Shock Factor σ32 of Escherichia coli by Interacting with DnaK/DnaJ Chaperone Team

Authors: Xibing Xu, Ke Liang, Yulong Niu, Yan Shen, Xuedong Wan, Haiyan Li, Yi Yang
Journal: Current Microbiology
Year: 2018

Endalkachew Etana | Statistical analysis | Editorial Board Member

Mr. Endalkachew Etana | Statistical analysis | Editorial Board Member

Mattu University, Ethiopia
Author Profile

Orcid 

🎓 Early Academic Pursuits

Mr. Endalkachew Etana’s academic journey started at Mizan Tepi University in Ethiopia, where he obtained his BSc in Chemistry (2012-2014) with a CGPA of 3.72. He further advanced his education with an MSc in Analytical Chemistry from Ambo University (2019-2021), achieving a CGPA of 3.90. These foundational years shaped his career in analytical and instrumental chemistry, setting the stage for his future contributions to the field.

👨‍🏫 Teaching Experience

With extensive teaching experience, Mr. Etana has imparted knowledge across several critical chemistry courses, including Analytical Chemistry, Instrumental Analysis, and Environmental Chemistry. He has also taught practical modules in Instrumental Analysis and Real Sample Analysis. His commitment to high-quality education is evident in his involvement in curriculum development and laboratory manual preparation, ensuring students receive a hands-on and comprehensive learning experience.

🏅 Professional Endeavors & Committee Involvement

Mr. Etana has actively participated in various professional committees, including serving as the Analytical Chemistry Stream Leader. His roles in staff development, recruitment, laboratory installations, and curriculum reviews highlight his leadership in improving academic standards. These contributions demonstrate his dedication to fostering a thriving academic community within his institution.

🔬 Contributions and Research Focus

Mr. Etana’s research contributions primarily focus on analytical chemistry, environmental issues, and health risks. His work includes the analysis of trace heavy metals in Ethiopian white sugar products, the development of greener microextraction methods for pesticide residue analysis, and the evaluation of potentially toxic elements in agricultural soils. His ongoing projects, such as assessing radionuclides and heavy metals in soil samples, continue to drive innovation in analytical methodologies and environmental safety.

🌍 Impact and Influence

The impact of Mr. Etana’s work extends beyond academic circles. His research on heavy metals, environmental pollutants, and food safety influences public health policies in Ethiopia. His published articles in leading journals like the Journal of Agriculture and Food Research and the Chinese Journal of Analytical Chemistry shape the discourse on environmental and health risks, particularly in the context of Ethiopian agriculture. His findings aim to improve the quality of life through safer food products and cleaner environments.

📚 Academic Cites and Publications

Mr. Etana’s research has been widely published, with notable contributions in peer-reviewed journals. His work includes studies on the human health risk assessments of heavy metals in Ethiopian sugar products, the development of microextraction methods for pesticide residues, and evaluating toxic elements in agricultural soils. His articles have contributed significantly to the body of knowledge on food safety and environmental health.

🛠️ Technical Skills

Mr. Etana is highly skilled in a variety of technical tools essential for research and teaching. These include proficiency in basic computer applications (MS Word, Excel, PowerPoint), Mendeley for reference management, and SPSS for statistical data analysis. His strong laboratory skills further enhance his research capabilities, making him well-equipped to conduct sophisticated scientific investigations.

🌐 Legacy and Future Contributions

Mr. Etana’s academic legacy is rooted in his commitment to advancing analytical chemistry and its applications in environmental health. His ongoing research into the optimization of extraction methods for caffeine in Ethiopian products and the study of heavy metal contamination continues to have far-reaching implications. As he continues to lead research projects, his work will contribute significantly to the field of environmental chemistry and the sustainability of agricultural practices in Ethiopia.

🏅 Awards and Conference Presentations

Mr. Etana has been recognized for his scholarly contributions, including winning the Best Paper Award at the international SIST-SHE 22 conference in India. He also participated in the 6th Annual National Research Conference at Mattu University in Ethiopia, where he presented on the integration of research with indigenous knowledge. These accolades reflect the high regard in which his work is held in the scientific community.

📜 Short-term Courses & Certifications

Mr. Etana demonstrates a commitment to continuous professional development by completing certifications in various fields. Notably, he has completed courses in Data Analysis Fundamentals and Artificial Intelligence Fundamentals, underscoring his dedication to staying current with the latest technological advancements and integrating them into his research and teaching.

 

📖 Top Noted Publications

Evaluation of some physicochemical parameters and health risks associated with potentially toxic elements (PTEs) in agricultural soils from the southwest region of Ethiopia

Authors: Endalkachew Etana, Redwan Hussein, Abire Huluka
Journal: Journal of Hazardous Materials Advances
Year: 2025

A development in greener microextraction methods for analysis of pesticide residues in environmental water samples: A review

Authors: Endalkachew Etana, Birhanu MEKASSA
Journal: Chinese Journal of Analytical Chemistry
Year: 2024

Proximate analysis, levels of trace heavy metals and associated human health risk assessments of Ethiopian white sugars

Authors: Birhanu Mekassa, Endalkachew Etana, Lemessa B. Merga
Journal: Journal of Agriculture and Food Research
Year: 2024