Xibing Xu | Data Science | Best Researcher Award

Dr. Xibing Xu | Data Science | Best Researcher Award

Shenzhen Medical Academy of Research and Translation, China

Author Profiles

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Early Academic Pursuits 🎓

Dr. Xibing Xu’s academic journey began with a solid foundation in biological sciences, leading to his Master’s degree from Shandong University in 2012. His Master’s thesis focused on the two-component signal transduction systems of Streptomyces hygroscopicus. This foundational research sparked his interest in bacterial biology and set the stage for his doctoral studies at Sichuan University. Dr. Xu’s Ph.D. thesis, completed in 2015, centered on “Protein homeostasis regulation and ubiquitin-like systems in bacteria,” deepening his expertise in bacterial systems and protein regulation.

Professional Endeavors 💼

his Ph.D., Dr. Xu expanded his research horizons by embarking on various international and prestigious roles. In 2017-2018, he was awarded a visiting scholarship by the China Scholarship Council, enabling him to work as a visiting scholar at the Laboratoire de Microbiologie et Génétique Moléculaire (LMGM) in Toulouse, France. This experience enhanced his research capabilities and fostered a deeper understanding of bacterial molecular mechanisms. From 2020 to the present, Dr. Xu has served as a Postdoctoral Fellow at LMGM, where he leads the ANR project M-Tox, which investigates translational control by HigB1 and MenT toxins in Mycobacterium tuberculosis.

Contributions and Research Focus 🔬

Dr. Xu’s research is at the cutting edge of microbiology, focusing on bacterial growth inhibition mechanisms mediated by toxins in toxin-antitoxin systems. Specifically, his work on deleterious tRNA nucleotidyltransferase toxins, like MenT in Mycobacterium tuberculosis, has unveiled novel bacterial mechanisms that regulate translation and protein homeostasis. His research involves exploring the role of tRNA biology in bacterial growth control and the interaction between tRNA and toxin proteins, a focus that has the potential to inform future therapeutic strategies for bacterial infections. His expertise extends to RNA-seq, enzymology, and protein-RNA/DNA interactions, all of which contribute to a deeper understanding of bacterial survival and virulence.

Impact and Influence 🌍

Dr. Xu’s work has far-reaching implications in microbial Microbiologie and therapeutic development. By identifying key mechanisms that control bacterial growth through toxin-antitoxin systems, his research addresses critical challenges in combating drug-resistant bacterial infections. His investigations into tRNA biology have provided insights into how bacteria regulate protein synthesis, which could lead to the development of novel antimicrobial strategies. His innovative research has garnered attention within the scientific community, reflected in invitations to present at major international conferences such as the 29th International tRNA Conference in 2024.

Academic Citations 📚

Dr. Xu’s contributions to the field have not only enhanced scientific knowledge but have also been widely recognized and cited in academic publications. His work on toxin-antitoxin systems and tRNA nucleotidyltransferase toxins has attracted significant attention in the microbiology and biochemistry fields. As his research continues to influence studies on bacterial translation control, his citation index is expected to grow, cementing his reputation as an expert in bacterial growth regulation and antibiotic resistance mechanisms.

Technical Skills 🛠️

Dr. Xu possesses a broad array of technical skills in biochemistry and molecular biology, enabling him to conduct complex experimental research. He is proficient in RNA-seq library design and construction, protein-DNA/RNA interaction analysis, and toxin protein purification and activity assays. Additionally, he has extensive experience in cell-free transcription and translation assays, essential for studying the mechanistic details of translation regulation in bacteria. His technical prowess underpins the success of his innovative research in bacterial biology and protein homeostasis.

Teaching Experience 👨‍🏫

Dr. Xu has a strong track record in teaching and academic supervision. From 2015 to 2020, he taught various courses such as Medical Biology, Medical Genetics, and Medical Cell Biology at Henan University of Science and Technology. His teaching not only involved extensive classroom hours but also practical experimental courses, allowing students to gain hands-on experience in molecular biology techniques. Since 2024, Dr. Xu has been supervising Master’s students at the University Paul Sabatier in Toulouse, mentoring students on projects related to phage peptides and protein homeostasis in bacteria, ensuring the next generation of scientists is equipped with the necessary research skills.

Legacy and Future Contributions 🌟

Dr. Xu’s current and future research promises to continue his legacy of groundbreaking work in microbiology, particularly in the areas of bacterial toxin-antitoxin systems and translation control. As a postdoctoral fellow and researcher at LMGM, he is leading projects that could revolutionize our understanding of bacterial growth regulation, with direct applications in combating drug-resistant Mycobacterium tuberculosis. His ongoing research, mentorship, and commitment to expanding scientific knowledge will ensure that his contributions to the field of microbiology will continue to grow in impact and influence.

 Top Noted Publications 📖

Title: Inducible auto-phosphorylation regulates a widespread family of nucleotidyltransferase toxins

Authors: Tom J. Arrowsmith, Xibing Xu, Shangze, Ben Usher, Peter Stokes, Megan Guest, Agnieszka K. Bronowska, Pierre Genevaux, Tim R. Blower
Journal: Nature Communications
Year: 2024

Title: MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding

Authors: Xibing Xu, Ben Usher, C. Gutierrez, R. Barriot, T.J. Arrowsmith, X. Han, P. Redder, O. Neyrolles, T.R. Blower, P. Genevaux
Journal: Nature Communications
Year: 2023

Title: Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis

Authors: Moïse, Emmanuel Giudice, Xibing Xu, Hatice Akarsu, Patricia Bordes, Valérie Guillet, Donna-Joe Bigot, Nawel Slama, Gaetano D’Urso, Sophie Chat et al.
Journal: Nature Communications
Year: 2022

Title: ClpXP-mediated Degradation of the TAC Antitoxin is Neutralized by the SecB-like Chaperone in Mycobacterium tuberculosis

Authors: Pauline Texier, Patricia Bordes, Jyotsna Nagpal, Ambre Julie Sala, Moise Mansour, Anne-Marie Cirinesi, Xibing Xu, David Andrew Dougan, Pierre Genevaux
Journal: Journal of Molecular Biology
Year: 2021

Title: The ubiquitin-like modification by ThiS and ThiF in Escherichia coli

Authors: Xibing Xu, Tao Wang, Yulong Niu, Ke Liang, Yi Yang
Journal: International Journal of Biological Macromolecules
Year: 2019

Title: BAH1 an E3 Ligase from Arabidopsis thaliana Stabilizes Heat Shock Factor σ32 of Escherichia coli by Interacting with DnaK/DnaJ Chaperone Team

Authors: Xibing Xu, Ke Liang, Yulong Niu, Yan Shen, Xuedong Wan, Haiyan Li, Yi Yang
Journal: Current Microbiology
Year: 2018

Randika Dodangodage | Atmospheric Science | Best Researcher Award

Dr. Randika Dodangodage | Atmospheric Science | Best Researcher Award

Dr. Randika Dodangodage at Old Dominion University, United States

👨‍🎓  Profiles

Early Academic Pursuits 🎓

Dr. Randika Dodangodage began his academic journey with a Bachelor of Science in Physics from the University of Sri Jayewardenepura, Sri Lanka, where he graduated with a second-class upper division in December 2014. His strong foundational knowledge in physics led him to further his studies at Old Dominion University, where he earned a Master of Science in Physics in March 2020 and is currently completing his PhD, expected in May 2024.

Professional Endeavors 💼

In his current role as a Post Doctoral Associate at Old Dominion University, Dr. Dodangodage focuses on analyzing laboratory spectra of molecules found in cool astronomical objects and data from Earth’s atmosphere measured by the ACE satellite. His previous experience includes working as a Research Assistant in molecular spectroscopy, where he contributed significantly under the supervision of Prof. Peter Bernath.

Contributions and Research Focus 🔬

Dr. Dodangodage’s research primarily centers on molecular spectroscopy and its applications in understanding atmospheres, both terrestrial and extraterrestrial. His work includes the development of line lists for various molecular systems, significantly advancing the field of spectroscopy and contributing valuable insights into the chemical composition of planetary atmospheres.

Impact and Influence 🌍

His research has garnered attention at international symposiums, where he has presented multiple papers, demonstrating the relevance of his work to global scientific communities. His contributions have not only enhanced the understanding of molecular behaviors in different environments but have also influenced ongoing research in atmospheric sciences.

Academic Cites 📚

Dr. Dodangodage has authored and co-authored several notable publications, including presentations at prominent conferences. His works, such as the LaO line list studies and infrared absorption cross sections of hydrocarbons, have been well-received in the scientific community, reflecting his expertise and the significance of his research.

Technical Skills 💻

Dr. Dodangodage possesses a diverse skill set, including proficiency in programming languages and software essential for his research, such as Matlab, Mathematica, Fortran, and Python. His ability to employ these tools effectively supports his research and contributes to his analytical capabilities.

Teaching Experience 🍎

Throughout his academic career, Dr. Dodangodage has also engaged in teaching. As a Teaching Assistant at both Old Dominion University and the University of Sri Jayewardenepura, he has contributed to educating the next generation of physicists, demonstrating a commitment to fostering academic growth in others.

Legacy and Future Contributions 🌟

Looking ahead, Dr. Dodangodage aims to continue his impactful research in molecular spectroscopy and atmospheric studies. His dedication to scientific inquiry and education positions him to make significant contributions to the field, inspiring future researchers and enhancing our understanding of the universe.

📖 Top Noted Publications

Spectroscopy of Atmospheres

Author: Randika Dodangodage
Journal: Dissertation/Thesis
Year: 2024

The first satellite measurements of HFC-125 by the ACE-FTS: Long-term trends and distribution in the Earth’s upper troposphere and lower stratosphere

Author: R. Dodangodage et al.
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2024

S-type Stars: Line List for the A2Π–X2Σ+ Band System of LaO

Author: P. F. Bernath, R. Dodangodage, J. Liévin
Journal: The Astrophysical Journal
Year: 2023

Infrared absorption cross sections for propene broadened by N2 (450-1250 cm−1) and by H2 (2680-3220 cm−1)

Author: P. Bernath, R. Dodangodage, J. Zhao, B. Billinghurst
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2022

S-type Stars: LaO Line List for the B2Σ+–X2Σ+ Band System

Author: P. F. Bernath, R. Dodangodage, J. Liévin
Journal: The Astrophysical Journal
Year: 2022

Absorption cross sections of n-butane, n-pentane, cyclopentane and cyclohexane

Author: Randika Dodangodage et al.
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2022

The first remote-sensing measurements of HFC-32 in the Earth’s atmosphere by the Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS)

Author: Randika Dodangodage
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2021

Absorption cross sections in the CH stretching region for propene broadened by helium and nitrogen

Author: Randika Dodangodage
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2021

HOCl retrievals from the Atmospheric Chemistry Experiment

Author: Randika Dodangodage
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2021

Absorption cross sections for ethane broadened by hydrogen and helium in the 3.3 micron region

Author: Randika Dodangodage
Journal: Journal of Quantitative Spectroscopy and Radiative Transfer
Year: 2020

Praveen Kumar | Data Analysis | Best Researcher Award

Dr. Praveen Kumar | Data Analysis | Best Researcher Award

Doctorate at Michigan State University, United States

👨‍🎓 Profile

🎓 Academic Background & Education:

Dr. P. P. Praveen Kumar holds a Ph.D. in Organic Chemistry from the Indian Institute of Technology (IIT) Delhi (2011-2016), where he focused on molecular recognition and self-assembling peptide-based systems. He earned his Master’s in Organic Chemistry from Christ College, Irinjalakuda (2007-2009), with an impressive grade of 85%. His undergraduate degree in Chemistry was completed at ST. Thomas College, Thrissur (2004-2007), where he achieved a high grade of 91%.

💼 Professional Experience:

Dr. Kumar is currently a Research Associate at Michigan State University (Aug 2023 – Present), working under Prof. Kim Taeho in the Biomedical Engineering Department. His research involves fabricating contrasting agents for tumor bioimaging, including MRI, Photoacoustic Imaging, and Magnetic Particle Imaging. Prior to this, he served as a Research Professor at the KU-KIST Graduate School of Converging Science and Technology, Korea University (Jan 2021 – Aug 2023), where he focused on SERS tags and chiral materials for biomedical applications. His postdoctoral research at the Institute of Nano Science and Technology (INST), Mohali, India (Mar 2017 – Jan 2020), under Prof. Prakash P. N, involved fabricating Gold-BODIPY nanocomposites for photonics and photodynamic therapy.

🔬 Research Interests:

Dr. Kumar’s research interests are centered on designing and synthesizing self-assembled materials for advanced biomedical applications. His work includes the development of nanomaterials for imaging and therapeutic purposes, such as MRI and Photoacoustic Imaging. He is particularly focused on chiral nanostructures and their optical applications, as well as creating luminescent materials and photosensitizers for bio-imaging and photodynamic therapy. Additionally, he explores peptide/amino acid-based catalysis and asymmetric catalysis.

🛠️ Skills & Techniques:

He possesses extensive skills in nanomaterial fabrication, bioimaging, and advanced characterization techniques, including NMR, SEM, TEM, FT-IR, and Raman Spectroscopy. Dr. Kumar is also proficient in various imaging technologies, such as Photoacoustic, MRI, MPI, and IVIS.

🏆 Honors & Awards:

Dr. Kumar has been recognized with several prestigious awards, including the BK21 Fellowship from the Korean Government (2021), the SERB-NPDF Fellowship from DST, India (2017-2020), and the CSIR-JRF/SRF Fellowship (2011-2016).

📖 Publications

Gold Polymer Nanomaterials: A Promising Approach for Enhanced Biomolecular Imaging”
    • Author: Panangattukara Prabhakaran Praveen Kumar, Ritu Mahajan
    • Journal: Nanotheranostics
    • Year: 2024
“A Multimode Detection Platform for Biothiols Using BODIPY Dye-Conjugated Gold Nanoparticles”
    • Author: Panangattukara Prabhakaran Praveen Kumar
    • Journal: Colorants
    • Year: 2024
“Unlocking the Potential of Gold as Nanomedicine in Cancer Immunotherapy”
    • Author: Panangattukara Prabhakaran Praveen Kumar, Maggie Lee, Taeho Kim
    • Journal: Journal of Nanotheranostics
    • Year: 2024
“Recent Advances in SERS-Based Bioanalytical Applications: Live Cell Imaging”
    • Author: Dong-Kwon Lim, Panangattukara Prabhakaran Praveen Kumar
    • Journal: Nanophotonics
    • Year: 2024
“Exosome-Coated Prussian Blue Nanoparticles for Specific Targeting and Treatment of Glioblastoma”
    • Author: Meghan L. Hill, Seock-Jin Chung, Hyun-Joo Woo, Cho Rong Park, Kay Hadrick, Md Nafiujjaman, Panangattukara Prabhakaran Praveen Kumar, Leila Mwangi, Rachna Parikh, Taeho Kim
    • Journal: ACS Applied Materials & Interfaces
    • Year: 2024